Article – Page 11 – Soft Matter Lab

Stability of Brain Graph Measures published in Sci. Rep.

Stability of graph theoretical measures in structural brain networks in Alzheimer’s disease
Gustav Mårtensson, Joana B. Pereira, Patrizia Mecocci, Bruno Vellas, Magda Tsolaki, Iwona Kłoszewska, Hilkka Soininen, Simon Lovestone, Andrew Simmons, Giovanni Volpe & Eric Westman
Scientific Reports 8, 11592 (2018)
DOI: 10.1038/s41598-018-29927-0

Graph analysis has become a popular approach to study structural brain networks in neurodegenerative disorders such as Alzheimer’s disease (AD). However, reported results across similar studies are often not consistent. In this paper we investigated the stability of the graph analysis measures clustering, path length, global efficiency and transitivity in a cohort of AD (N = 293) and control subjects (N = 293). More specifically, we studied the effect that group size and composition, choice of neuroanatomical atlas, and choice of cortical measure (thickness or volume) have on binary and weighted network properties and relate them to the magnitude of the differences between groups of AD and control subjects. Our results showed that specific group composition heavily influenced the network properties, particularly for groups with less than 150 subjects. Weighted measures generally required fewer subjects to stabilize and all assessed measures showed robust significant differences, consistent across atlases and cortical measures. However, all these measures were driven by the average correlation strength, which implies a limitation of capturing more complex features in weighted networks. In binary graphs, significant differences were only found in the global efficiency and transitivity measures when using cortical thickness measures to define edges. The findings were consistent across the two atlases, but no differences were found when using cortical volumes. Our findings merits future investigations of weighted brain networks and suggest that cortical thickness measures should be preferred in future AD studies if using binary networks. Further, studying cortical networks in small cohorts should be complemented by analyzing smaller, subsampled groups to reduce the risk that findings are spurious.

Review on Optical Tweezers published in J. Quant. Spectrosc. Rad. Transf.

Optical tweezers and their applications
Paolo Polimeno, Alessandro Magazzù, Maria Antonia Iata, Francesco Patti, Rosalba Saija, Cristian Degli Esposti Boschi, Maria Grazia Donato, Pietro G. Gucciardi, Philip H. Jones, Giovanni Volpe & Onofrio M. Maragò
Journal of Quantitative Spectroscopy and Radiative Transfer 218(October 2018), 131—150 (2018)
DOI: 10.1016/j.jqsrt.2018.07.013

Optical tweezers, tools based on strongly focused light, enable optical trapping, manipulation, and characterisation of a wide range of microscopic and nanoscopic materials. In the limiting cases of spherical particles either much smaller or much larger than the trapping wavelength, the force in optical tweezers separates into a conservative gradient force, which is proportional to the light intensity gradient and responsible for trapping, and a non-conservative scattering force, which is proportional to the light intensity and is generally detrimental for trapping, but fundamental for optical manipulation and laser cooling. For non-spherical particles or at intermediate (meso)scales, the situation is more complex and this traditional identification of gradient and scattering force is more elusive. Moreover, shape and composition can have dramatic consequences for optically trapped particle dynamics. Here, after an introduction to the theory and practice of optical forces with a focus on the role of shape and composition, we give an overview of some recent applications to biology, nanotechnology, spectroscopy, stochastic thermodynamics, critical Casimir forces, and active matter.

Active Atoms and Interstitials published in Phys. Rev. Lett.

Active Atoms and Interstitials in Two-dimensional Colloidal Crystals
Kilian Dietrich, Giovanni Volpe, Muhammad Nasruddin Sulaiman, Damian Renggli, Ivo Buttinoni & Lucio Isa
Physical Review Letters 120(26), 268004 (2018)
DOI: 10.1103/PhysRevLett.120.268004
arXiv: 1710.08680

We study experimentally and numerically the motion of a self-phoretic active particle in two-dimensional loosely packed colloidal crystals at fluid interfaces. Two scenarios emerge depending on the interactions between the active particle and the lattice: the active particle either navigates throughout the crystal as an interstitial or is part of the lattice and behaves as an active atom. Active interstitials undergo a run-and-tumble-like motion, with the passive colloids of the crystal acting as tumbling sites. Instead, active atoms exhibit an intermittent motion, stemming from the interplay between the periodic potential landscape of the passive crystal and the particle’s self-propulsion. Our results constitute the first step towards the realization of non-close-packed crystalline phases with internal activity.

Special Issue on Biophotonics published in Biomed. Opt. Express

Biophotonics feature: introduction
Paolo Campagnola, Daniel Cote, Francesco Pavone, Peter Reece, Vivek J. Srinivasan, Tomasz Tkaczyk & Giovanni Volpe
Biomedical Optics Express 9(3), 1229–1231 (2018)
DOI: 10.1364/BOE.9.001229

Microscopic Critical Engine published in Phys. Rev. Lett.

Microscopic engine powered by critical demixing
Falko Schmidt, Alessandro Magazzù, Agnese Callegari, Luca Biancofiore, Frank Cichos & Giovanni Volpe
Physical Review Letters 120(6), 068004 (2018)
DOI: 10.1103/PhysRevLett.120.068004
arXiv: 1705.03317

We experimentally demonstrate a microscopic engine powered by the local reversible demixing of a critical mixture. We show that, when an absorbing microsphere is optically trapped by a focused laser beam in a sub-critical mixture, it is set into rotation around the optical axis of the beam because of the emergence of diffusiophoretic propulsion. This behavior can be controlled by adjusting the optical power, the temperature, and the criticality of the mixture.

Featured in :
“Focus: A Tiny Engine Powered by Light and Liquid Physics”, Physics 11, 16 (February 9, 2018)
“Laser + Critical Liquid = Micro-Engine”, Optics & Photonics News (February 12, 2018)
“Tiny engine powered by demixing fluid” Phys.Org (February 12, 2018)
“Расслаивание растворителя закрутило микрочастицы вокруг лазерного пучка”, N+1: научные статьи, новости, открытия (February 12, 2018)
“Tiny engine powered by remixing fluid”, Brinkwire (February 16, 2018)

Dynamic Deposition of Particles in Evaporating Droplets published in J. Phys. Chem. Lett.

Dynamic control of particle deposition in evaporating droplets by an external point source vapor
Robert Malinowski, Giovanni Volpe, Ivan Parkin & Giorgio Volpe
The Journal of Physical Chemistry Letters 9(3), 659—664 (2018)
DOI: 10.1021/acs.jpclett.7b02831
arXiv: 1801.08218

The deposition of particles on a surface by an evaporating sessile droplet is important for phenomena as diverse as printing, thin-film deposition, and self-assembly. The shape of the final deposit depends on the flows within the droplet during evaporation. These flows are typically determined at the onset of the process by the intrinsic physical, chemical, and geometrical properties of the droplet and its environment. Here, we demonstrate deterministic emergence and real-time control of Marangoni flows within the evaporating droplet by an external point source of vapor. By varying the source location, we can modulate these flows in space and time to pattern colloids on surfaces in a controllable manner.

Altered Brain Network in Amyloid Pathology published in Neurobiol. Aging

Altered structural network organization in cognitively normal individuals with amyloid pathology
Olga Voevodskaya, Joana B. Pereira, Giovanni Volpe, Olof Lindberg, Erik Stomrud, Danielle van Westen, Eric Westman & Oskar Hansson
Neurobiology of Aging 64, 15—24 (2018)
DOI: 10.1016/j.neurobiolaging.2017.11.014

Recent findings show that structural network topology is disrupted in Alzheimer’s disease (AD), with changes occurring already at the prodromal disease stages. Amyloid accumulation, a hallmark of AD, begins several decades before symptom onset, and its effects on brain connectivity at the earliest disease stages are not fully known. We studied global and local network changes in a large cohort of cognitively healthy individuals (N = 299, Swedish BioFINDER study) with and without amyloid-β (Aβ) pathology (based on cerebrospinal fluid Aβ42/Aβ40 levels). Structural correlation matrices were constructed based on magnetic resonance imaging cortical thickness data. Despite the fact that no significant regional cortical atrophy was found in the Aβ-positive group, this group exhibited an altered global network organization, including decreased global efficiency and modularity. At the local level, Aβ-positive individuals displayed fewer and more disorganized modules as well as a loss of hubs. Our findings suggest that changes in network topology occur already at the presymptomatic (preclinical) stage of AD and may precede detectable cortical thinning.

Amyloid Network Topology in Alzheimer published in Cerebral Cortex

Amyloid network topology characterizes the progression of Alzheimer’s disease during the predementia stages
Joana B. Pereira, Tor Olof Strandberg, Sebastian Palmqvist, Giovanni Volpe, Danielle van Westen, Eric Westman & Oskar Hansson, for the Alzheimer’s Disease Neuroimaging Initiative
Cerebral Cortex 28(1), 340—349 (2018)
DOI: 10.1093/cercor/bhx294

There is increasing evidence showing that the accumulation of the amyloid-β (Aβ) peptide into extracellular plaques is a central event in Alzheimer’s disease (AD). These abnormalities can be detected as lowered levels of Aβ42 in the cerebrospinal fluid (CSF) and are followed by increased amyloid burden on positron emission tomography (PET) several years before the onset of dementia. The aim of this study was to assess amyloid network topology in nondemented individuals with early stage Aβ accumulation, defined as abnormal CSF Aβ42 levels and normal Florbetapir PET (CSF+/PET−), and more advanced Aβ accumulation, defined as both abnormal CSF Aβ42 and Florbetapir PET (CSF+/PET+). The amyloid networks were built using correlations in the mean 18F-florbetapir PET values between 72 brain regions and analyzed using graph theory analyses. Our findings showed an association between early amyloid stages and increased covariance as well as shorter paths between several brain areas that overlapped with the default-mode network (DMN). Moreover, we found that individuals with more advanced amyloid accumulation showed more widespread changes in brain regions both within and outside the DMN. These findings suggest that amyloid network topology could potentially be used to assess disease progression in the predementia stages of AD.

Metastable Clusters and Channels published in New J. Phys.

Metastable clusters and channels formed by active particles with aligning interactions
Simon Nilsson & Giovanni Volpe
New Journal of Physics 19, 115008 (2017)
DOI: 10.1088/1367-2630/aa9516
arXiv: 1706.01326

We introduce a novel model for active particles with short-range position-dependent aligning interactions and study their behaviour in crowded environments using numerical simulations. When only active particles are present, we observe a transition from a gaseous state to the emergence of metastable clusters as the level of orientational noise is reduced. When passive particles are also present, we observe the emergence of a network of metastable channels.

Minimal Microscopic Heat Engine published in Phys. Rev. E

Experimental realization of a minimal microscopic heat engine
Aykut Argun, Jalpa Soni, Lennart Dabelow, Stefano Bo, Giuseppe Pesce, Ralf Eichhorn & Giovanni Volpe
Physical Review E 96(5), 052106 (2017)
DOI: 10.1103/PhysRevE.96.052106
arXiv: 1708.07197

Microscopic heat engines are microscale systems that convert energy flows between heat reservoirs into work or systematic motion. We have experimentally realized a minimal microscopic heat engine. It consists of a colloidal Brownian particle optically trapped in an elliptical potential well and simultaneously coupled to two heat baths at different temperatures acting along perpendicular directions. For a generic arrangement of the principal directions of the baths and the potential, the symmetry of the system is broken, such that the heat flow drives a systematic gyrating motion of the particle around the potential minimum. Using the experimentally measured trajectories, we quantify the gyrating motion of the particle, the resulting torque that it exerts on the potential, and the associated heat flow between the heat baths. We find excellent agreement between the experimental results and the theoretical predictions.