Preprints

[Link to Articles]

1. Microscopic Geared Mechanisms
   Gan Wang, Marcel Rey, Antonio Ciarlo, Mohanmmad Mahdi Shanei, Kunli Xiong, Giuseppe Pesce, Mikael Käll and Giovanni Volpe
   arXiv: 2409.17284
2. Diffusion Models to Enhance the Resolution of Microscopy Images: A Tutorial
   Harshith Bachimanchi, Giovanni Volpe
   arXiv: 2409.16488
3. Critical Casimir levitation of colloids above a bull’s-eye pattern
   Piotr Nowakowski, Nima Farahmand Bafi, Giovanni Volpe, Svyatoslav Kondrat, S. Dietrich
   arXiv: 2409.08366
4. Tutorial for the growth and development of Myxococcus xanthus as a Model System at the Intersection of Biology and Physics
   Jesus Manuel Antúnez Domínguez, Laura Pérez García, Natsuko Rivera-Yoshida, Jasmin Di Franco, David Steiner, Alejandro V. Arzola, Mariana Benítez, Charlotte Hamngren Blomqvist, Roberto Cerbino, Caroline Beck Adiels, Giovanni Volpe
   arXiv: 2407.18714
5. Connecting genomic results for psychiatric disorders to human brain cell types and regions reveals convergence with functional connectivity
   Shuyang Yao, Arvid Harder, Fahimeh Darki, Yu-Wei Chang , Ang Li, Kasra Nikouei, Giovanni Volpe, Johan N Lundström, Jian Zeng , Naomi Wray, Yi Lu, Patrick F Sullivan, Jens Hjerling-Leffler
   medRxiv: 10.1101/2024.01.18.24301478
6. Accelerating Plasmonic Hydrogen Sensors for Inert Gas Environments by Transformer-Based Deep Learning
   Viktor Martvall, Henrik Klein Moberg, Athanasios Theodoridis, David Tomeček, Pernilla Ekborg-Tanner, Sara Nilsson, Giovanni Volpe, Paul Erhart, Christoph Langhammer
   arXiv: 2312.15372
7. Destructive effect of fluctuations on the performance of a Brownian gyrator
   Pascal Viot, Aykut Argun, Giovanni Volpe, Alberto Imparato, Lamberto Rondoni, Gleb Oshanin
   arxiv: 2307.05248
8. Roadmap on Deep Learning for Microscopy
   Giovanni Volpe, Carolina Wählby, Lei Tian, Michael Hecht, Artur Yakimovich, Kristina Monakhova, Laura Waller, Ivo F. Sbalzarini, Christopher A. Metzler, Mingyang Xie, Kevin Zhang, Isaac C.D. Lenton, Halina Rubinsztein-Dunlop, Daniel Brunner, Bijie Bai, Aydogan Ozcan, Daniel Midtvedt, Hao Wang, Nataša Sladoje, Joakim Lindblad, Jason T. Smith, Marien Ochoa, Margarida Barroso, Xavier Intes, Tong Qiu, Li-Yu Yu, Sixian You, Yongtao Liu, Maxim A. Ziatdinov, Sergei V. Kalinin, Arlo Sheridan, Uri Manor, Elias Nehme, Ofri Goldenberg, Yoav Shechtman, Henrik K. Moberg, Christoph Langhammer, Barbora Špačková, Saga Helgadottir, Benjamin Midtvedt, Aykut Argun, Tobias Thalheim, Frank Cichos, Stefano Bo, Lars Hubatsch, Jesus Pineda, Carlo Manzo, Harshith Bachimanchi, Erik Selander, Antoni Homs-Corbera, Martin Fränzl, Kevin de Haan, Yair Rivenson, Zofia Korczak, Caroline Beck Adiels, Mite Mijalkov, Dániel Veréb, Yu-Wei Chang, Joana B. Pereira, Damian Matuszewski, Gustaf Kylberg, Ida-Maria Sintorn, Juan C. Caicedo, Beth A Cimini, Muyinatu A. Lediju Bell, Bruno M. Saraiva, Guillaume Jacquemet, Ricardo Henriques, Wei Ouyang, Trang Le, Estibaliz Gómez-de-Mariscal, Daniel Sage, Arrate Muñoz-Barrutia, Ebba Josefson Lindqvist, Johanna Bergman
   arXiv: 2303.03793
9. Playing with Active Matter
   Angelo Barona Balda, Aykut Argun, Agnese Callegari, Giovanni Volpe
   arXiv: 2209.04168
10. Dynamic live/apoptotic cell assay using phase-contrast imaging and deep learning
    Zofia Korczak, Jesús Pineda, Saga Helgadottir, Benjamin Midtvedt, Mattias Goksör, Giovanni Volpe, Caroline B. Adiels
    bioRxiv: 10.1101/2022.07.18.500422
11. AnDi: The Anomalous Diffusion Challenge
    Gorka Muñoz-Gil, Giovanni Volpe, Miguel Angel Garcia-March, Ralf Metzler, Maciej Lewenstein & Carlo Manzo
    arXiv: 2003.12036