Presentation by M. Granfors at BNMI 2025, Gothenburg, 20 August 2025

DeepTrack2 Logo. (Image by J. Pineda)
DeepTrack2: physics-based microscopy simulations for deep learning
Mirja Granfors, Alex Lech, Benjamin Midtvedt, Jesús Pineda, Harshith Bachimanchi, Carlo Manzo, and Giovanni Volpe
BNMI 2025, 19-22 August 2025, Gothenburg, Sweden
Date: 20 August 2025
Time: 15:00 – 15:15
Place:  Wallenberg Conference Centre

DeepTrack2 is a flexible and scalable Python library designed to generate physics-based synthetic microscopy datasets for training deep learning models. It supports a wide range of imaging modalities, including brightfield, fluorescence, darkfield, and holography, enabling the creation of synthetic samples that accurately replicate real experimental conditions. Its modular architecture empowers users to customize optical systems, incorporate optical aberrations and noise, simulate diverse objects across various imaging scenarios, and apply image augmentations. DeepTrack2 is accompanied by a dedicated GitHub page, providing extensive documentation, examples, and an active community for support and collaboration: https://github.com/DeepTrackAI/DeepTrack2.

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