Group Retreat 18 October 2024

Location: Wallenberg Conference Center, Göteborg
Date: 18 October 2024
Time: 9-17

Program

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9:00-9:15       Welcome

9:15-10:00       Session 1

  • Yuxin Guo: Brain Connectome Analysis Using Deep Learning Techniques
  • Fredrik Skäberg: 3D Rotation Recovery and Tomographic Reconstruction of Biological Objects
  • Jason Lewis: Simulating Intelligent Active Matter
  • Linnea Landstedt: Analysis of kidney cells exposed to shear stress in a microfluidic system
  • Benjamin Midvedt: Modality agnostic, optical nanoparticle sizing using contrastive learning

10:00-10:30       Fika

10:30-11:15       Session 2

  • Elisa Ortiz Rivero: Probe-free tracking of intracellular insulin granules by off-axis holographic microscopy
  • Vide Ramsten: Physical Neural Networks with Robots
  • Martin Selin: Autonomous optical tweezers
  • Daniela Pérez Guerrero: Biofilm Formation Analysis via Time-Resolved Droplet Microfluidics and Artificial Intelligence

11:15-11:30       Short Break

11:30-12:15       Session 3

  • Janko Vrcek: Investigating the dynamics of protein condensates via computer simulations and theory
  • Gan Wang: Microfabrication techniques application: from passive particle manipulation to active microswimmer, micromachine and microfluidic control
  • Antonio Ciarlo: Mean Back Relaxation with inertial effects
  • Mirja Granfors: Global graph features unveiled by unsupervised geometric deep learning

12:15-12:30       Group Picture

12:30-14:00       Lunch Break

14:00-14:45       Session 4

  • Norma Caridad Palmero Cruz: Study of communication between the microbiome and neuronal activity using the zebrafish as a model
  • Yuchao He: Particle tracking with Lodestar and MAGIK
  • Nienke Coelingh: The role of selected chromatin remodelling factors in protein homeostasis upon stress
  • Aarón Domenzain del castillo Cerecer: Simplifying Particle Tracking: An Accessible Guide for Experimental Researchers
  • Linde Viaene: Single-molecule microscopy and the start of image analysis

14:45-15:15       Fika

15:15-16:00       Session 5

  • Jesus Pineda: Geometric deep learning unravels nanostructures in single-molecule localization microscopy
  • Mingqi Peng: holographic microscopy for age- and disease-associated protein aggregates
  • Laura Natali: Variational autoencoder in a swarm of robots
  • Hang Zhao: Brain connectome and deep learning
  • Harshith Bachimanchi: Deep learning in plankton ecology

16:00-17:00       Closing remarks

Photos

Soft Matter Lab & Biophysics Lab – Group Picture – 18 October 2024